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raw visium spatial transcriptomics data  (Spatial Transcriptomics Inc)

 
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    Structured Review

    Spatial Transcriptomics Inc raw visium spatial transcriptomics data
    (A–C) UMAP plots of <t>Visium</t> spatial spots from SCC samples. (A) Spots colored by sample origin. (B) Spots labeled by spatial zones (core, edge, surrounding). (C) Grouped zones highlight transcriptomic patterns at tumor boundaries. (D) Heatmap showing spatial proximity among tumor zones. Higher intensity indicates closer spatial interaction, illustrating SCC microenvironment organization. (E) Ligand–receptor analysis identifies fibroblast-derived SFRP2 interacting with LRP5/6, suggesting Wnt signaling activation. (F) Spatial maps of SFRP2⁺ fibroblasts and Wnt signaling scores in SCC. Enrichment in tumor cores and interfaces points to fibroblast-driven modulation of the tumor niche.
    Raw Visium Spatial Transcriptomics Data, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/raw visium spatial transcriptomics data/product/Spatial Transcriptomics Inc
    Average 86 stars, based on 1 article reviews
    raw visium spatial transcriptomics data - by Bioz Stars, 2026-06
    86/100 stars

    Images

    1) Product Images from "Integrated Single-Cell and Spatial Transcriptomic Analysis Reveals an Aging-Associated Fibroblast Subtype Linked to Tumor Progression in Human Skin"

    Article Title: Integrated Single-Cell and Spatial Transcriptomic Analysis Reveals an Aging-Associated Fibroblast Subtype Linked to Tumor Progression in Human Skin

    Journal: bioRxiv

    doi: 10.1101/2025.07.09.663827

    (A–C) UMAP plots of Visium spatial spots from SCC samples. (A) Spots colored by sample origin. (B) Spots labeled by spatial zones (core, edge, surrounding). (C) Grouped zones highlight transcriptomic patterns at tumor boundaries. (D) Heatmap showing spatial proximity among tumor zones. Higher intensity indicates closer spatial interaction, illustrating SCC microenvironment organization. (E) Ligand–receptor analysis identifies fibroblast-derived SFRP2 interacting with LRP5/6, suggesting Wnt signaling activation. (F) Spatial maps of SFRP2⁺ fibroblasts and Wnt signaling scores in SCC. Enrichment in tumor cores and interfaces points to fibroblast-driven modulation of the tumor niche.
    Figure Legend Snippet: (A–C) UMAP plots of Visium spatial spots from SCC samples. (A) Spots colored by sample origin. (B) Spots labeled by spatial zones (core, edge, surrounding). (C) Grouped zones highlight transcriptomic patterns at tumor boundaries. (D) Heatmap showing spatial proximity among tumor zones. Higher intensity indicates closer spatial interaction, illustrating SCC microenvironment organization. (E) Ligand–receptor analysis identifies fibroblast-derived SFRP2 interacting with LRP5/6, suggesting Wnt signaling activation. (F) Spatial maps of SFRP2⁺ fibroblasts and Wnt signaling scores in SCC. Enrichment in tumor cores and interfaces points to fibroblast-driven modulation of the tumor niche.

    Techniques Used: Labeling, Derivative Assay, Activation Assay



    Similar Products

    raw visium spatial transcriptomics data  (Spatial Transcriptomics Inc)
    86
    Spatial Transcriptomics Inc raw visium spatial transcriptomics data
    (A–C) UMAP plots of <t>Visium</t> spatial spots from SCC samples. (A) Spots colored by sample origin. (B) Spots labeled by spatial zones (core, edge, surrounding). (C) Grouped zones highlight transcriptomic patterns at tumor boundaries. (D) Heatmap showing spatial proximity among tumor zones. Higher intensity indicates closer spatial interaction, illustrating SCC microenvironment organization. (E) Ligand–receptor analysis identifies fibroblast-derived SFRP2 interacting with LRP5/6, suggesting Wnt signaling activation. (F) Spatial maps of SFRP2⁺ fibroblasts and Wnt signaling scores in SCC. Enrichment in tumor cores and interfaces points to fibroblast-driven modulation of the tumor niche.
    Raw Visium Spatial Transcriptomics Data, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/raw visium spatial transcriptomics data/product/Spatial Transcriptomics Inc
    Average 86 stars, based on 1 article reviews
    raw visium spatial transcriptomics data - by Bioz Stars, 2026-06
    86/100 stars
    		  Buy from Supplier

    Image Search Results


    (A–C) UMAP plots of Visium spatial spots from SCC samples. (A) Spots colored by sample origin. (B) Spots labeled by spatial zones (core, edge, surrounding). (C) Grouped zones highlight transcriptomic patterns at tumor boundaries. (D) Heatmap showing spatial proximity among tumor zones. Higher intensity indicates closer spatial interaction, illustrating SCC microenvironment organization. (E) Ligand–receptor analysis identifies fibroblast-derived SFRP2 interacting with LRP5/6, suggesting Wnt signaling activation. (F) Spatial maps of SFRP2⁺ fibroblasts and Wnt signaling scores in SCC. Enrichment in tumor cores and interfaces points to fibroblast-driven modulation of the tumor niche.

    Journal: bioRxiv

    Article Title: Integrated Single-Cell and Spatial Transcriptomic Analysis Reveals an Aging-Associated Fibroblast Subtype Linked to Tumor Progression in Human Skin

    doi: 10.1101/2025.07.09.663827

    Figure Lengend Snippet: (A–C) UMAP plots of Visium spatial spots from SCC samples. (A) Spots colored by sample origin. (B) Spots labeled by spatial zones (core, edge, surrounding). (C) Grouped zones highlight transcriptomic patterns at tumor boundaries. (D) Heatmap showing spatial proximity among tumor zones. Higher intensity indicates closer spatial interaction, illustrating SCC microenvironment organization. (E) Ligand–receptor analysis identifies fibroblast-derived SFRP2 interacting with LRP5/6, suggesting Wnt signaling activation. (F) Spatial maps of SFRP2⁺ fibroblasts and Wnt signaling scores in SCC. Enrichment in tumor cores and interfaces points to fibroblast-driven modulation of the tumor niche.

    Article Snippet: Raw Visium spatial transcriptomics data (BCL and FASTQ files) were processed using the SpaceRanger v1.3.1 pipeline (10x Genomics).

    Techniques: Labeling, Derivative Assay, Activation Assay